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Proceedings of the National Academy of Sciences

published: 2016

vol. 113:1 pp. 116–121

Citation

X Xu, T Yu, S Chen, Understanding the kinetic mechanism of RNA single base pair formation, Proceedings of the National Academy of Sciences, 116–121, 2016.

Citation

G Morota, T Beissinger, F Peñagaricano, MeSH annotation of the chicken genome: MeSH-informed enrichment analysis and MeSH-guided semantic similarity among functional terms and gene products, bioRxiv, 034975, 2016.

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Annual Review of Genetics

published: 2016

vol. 50:1

Citation

J Pires, G Conant, Robust Yet Fragile: Expression Noise, Protein Misfolding and Gene Dosage in the Evolution of Genomes, Annual Review of Genetics, 2016.

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BMC genomics

published: 2016

vol. 17:1 pp. 1

Citation

B Khatabi, S Arikit, B Meyers, V Fondong, High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs, BMC genomics, 1, 2016.

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Brain Structure and Function

published: 2016

pp. 1–18

Citation

P Samarth, J Ball, G Unal, D Paré, S Nair, Mechanisms of memory storage in a model perirhinal network, Brain Structure and Function, 1–18, 2016.

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Neuroscience

published: 2016

vol. 334: pp. 309–331

Citation

A Alturki, J Feng, S Nair, V Guntu, Distinct current modules shape cellular dynamics in model neurons, Neuroscience, 309–331, 2016.

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Neuroscience

published: 2016

vol. 322: pp. 370–376

Citation

F Feng, P Samarth, D Pare, S Nair, Mechanisms underlying the formation of the amygdalar fear memory trace: A computational perspective, Neuroscience, 370–376, 2016.

Citation

N Zhang, S Debroy, P Calyam, Network-wide Anomaly Event Detection and Diagnosis with perfSONAR, 2016.

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International Journal of Plant Sciences

published: 2016

vol. 177:4 pp. 305–318

Citation

J Washburn, K Bird, G Conant, J Pires, P Herendeen, Convergent Evolution and the Origin of Complex Phenotypes in the Age of Systems Biology, International Journal of Plant Sciences, 305–318, 2016.

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RNA Structure Determination: Methods and Protocols

published: 2016

pp. 63–72

Citation

X Xu, S Chen, A Method to Predict the Structure and Stability of RNA/RNA Complexes, RNA Structure Determination: Methods and Protocols, 63–72, 2016.

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Methods

published: 2016

Citation

K Urak, S Shore, W Rockey, S Chen, A McCaffrey, P Giangrande, In vitro RNA SELEX for the generation of chemically-optimized therapeutic RNA drugs, Methods, 2016.

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Methods

published: 2016

Citation

X Xu, D Dickey, S Chen, P Giangrande, Structural computational modeling of RNA aptamers, Methods, 2016.

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arXiv preprint arXiv:1602.04277

published: 2016

Citation

R Cao, T Jo, J Cheng, Evaluation of Protein Structural Models Using Random Forests, arXiv preprint arXiv:1602.04277, 2016.

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Data Mining Techniques for the Life Sciences

published: 2016

pp. 463–476

Citation

B Adhikari, J Cheng, Protein Residue Contacts and Prediction Methods, Data Mining Techniques for the Life Sciences, 463–476, 2016.

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Scientific reports

published: 2016

vol. 6:

Citation

J Nowotny, K Wells, O Oluwadare, L Xu, R Cao, T Trieu, C He, J Cheng, GMOL: An Interactive Tool for 3D Genome Structure Visualization, Scientific reports, 2016.

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arXiv preprint arXiv:1601.00891

published: 2016

Citation

H Jiang, T Oron, W Clark, A Bankapur, Cheng,Jianlin, An expanded evaluation of protein function prediction methods shows an improvement in accuracy, arXiv preprint arXiv:1601.00891, 2016.

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PloS one

published: 2016

vol. 11:5 pp. e0154973

Citation

B Gandolfi, R Grahn, E Gustafson, D Proverbio, E Spada, B Adhikari, J Cheng, A Novel Variant in CMAH Is Associated with Blood Type AB in Ragdoll Cats, PloS one, e0154973, 2016.

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Nucleic acids research

published: 2016

pp. gkw336

Citation

D Bhattacharya, J Nowotny, R Cao, J Cheng, 3Drefine: an interactive web server for efficient protein structure refinement, Nucleic acids research, gkw336, 2016.

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arXiv preprint arXiv:1607.01384

published: 2016

Citation

R Cao, Z Zhong, J Cheng, SMISS: A protein function prediction server by integrating multiple sources, arXiv preprint arXiv:1607.01384, 2016.

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Bioinformatics

published: 2016

pp. btw067

Citation

D Bhattacharya, B Adhikari, J Li, J Cheng, FRAGSION: ultra-fast protein fragment library generation by IOHMM sampling, Bioinformatics, btw067, 2016.

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