Skip to navigation Skip to content

Core Faculty

Trupti Joshi, Ph.D.

Assistant Research Professor

Office: 271B Life Science Center

Phone: (573) 884-3528

Email: joshitr@missouri.edu

Lab URL: http://engineering.missouri.edu/person/joshi-trupti/

Home Department: Health Management Informatics

Concentration: Biomedical Informatics

Education:

Dr. Trupti Joshi is the Director of Translational Bioinformatics at the School of Medicine Medical Research Office and Assistant Research Professor in the Department of Molecular Microbiology and Immunology (MMI) at the University of Missouri-Columbia. She has appointments as Core Faculty with MU Informatics Institute (MUII), Interdisciplinary Plant Group (IPG) and Department of Computer Science. Her expertise is in the areas of bioinformatics and its application to plants sciences, animal sciences, biomedical sciences and health informatics fields. She obtained her Bachelor’s degree in Medicine and Surgery, followed by Advanced degree in Bioinformatics, both from highly reputable universities in India. Following this she obtained her MS degree in Bioinformatics from University of Tennessee and her Ph.D. degree in Bioinformatics from University of Missouri. She has published more than 50 journal publications including NAR, Nature, BMC Genomics, Bioinformatics, OMICS, PLOS One, etc. and Book Chapters in Knowledge Discovery in Bioinformatics: Techniques, Methods and Application and Genomics Protocols volume of Methods in Molecular Biology.

Selected Publications

39 entries « 1 of 4 »

2017

Du, J; Liang, Z; Xu, J; Zhao, Y; Li, X; Zhang, Y; Zhao, D; Chen, R; Liu, Y; Joshi, T; Chang, J; Wang, Z; Zhang, Y; Zhu, J; Liu, Q; Xu, D; Jiang, C

Plant-derived phosphocholine facilitates cellular uptake of anti-pulmonary fibrotic HJT-sRNA-m7 (Journal Article)

Sci China Life Sci, 2017, ISSN: 1869-1889 (Electronic) 1674-7305 (Linking).

(Links | BibTeX)

Hossain, M S; Kawakatsu, T; Kim, K D; Zhang, N; Nguyen, C T; Khan, S M; Batek, J M; Joshi, T; Schmutz, J; Grimwood, J; Schmitz, R J; Xu, D; Jackson, S A; Ecker, J R; Stacey, G

Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs (Journal Article)

New Phytol, 2017, ISSN: 1469-8137 (Electronic) 0028-646X (Linking).

(Links | BibTeX)

Joshi, T; Wang, J; Zhang, H; Chen, S; Zeng, S; Xu, B; Xu, D

The Evolution of Soybean Knowledge Base (SoyKB) (Journal Article)

Methods Mol Biol, 1533 , pp. 149-159, 2017, ISSN: 1940-6029 (Electronic) 1064-3745 (Linking).

(Links | BibTeX)

Wang, D; Zeng, S; Xu, C; Qiu, W; Liang, Y; Joshi, T; Xu, D

MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction (Journal Article)

Bioinformatics, 33 (24), pp. 3909-3916, 2017, ISSN: 1367-4811 (Electronic) 1367-4803 (Linking).

(Links | BibTeX)

2016

Dickinson, M; Debroy, S; Calyam, P; Valluripally, S; Zhang, Y X; Joshi, T; Xu, D

End-to-End Security Formalization and Alignment for Federated Workflow Management (Journal Article)

Proceedings of 2016 Ieee 9th International Conference on Cloud Computing (Cloud), pp. 59-67, 2016, ISSN: 2159-6182.

(Links | BibTeX)

dos Santos, J V M; Valliyodan, B; Joshi, T; Khan, S M; Liu, Y; Wang, J X; Vuong, T D; de Oliveira, M F; Marcelino-Guimaraes, F C; Xu, D; Nguyen, H T; Abdelnoor, R V

Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing (Journal Article)

Bmc Genomics, 17 , 2016, ISSN: 1471-2164.

(Links | BibTeX)

Joshi, T; Caswell, A; Acharya, S

A difficult case of recurrent hypoglycaemia: role of insulin assays in establishing the diagnosis (Journal Article)

Diabet Med, 33 (12), pp. e36-e39, 2016, ISSN: 1464-5491 (Electronic) 0742-3071 (Linking).

(Links | BibTeX)

Liu, Y; Khan, S M; Wang, J; Rynge, M; Zhang, Y; Zeng, S; Chen, S; Santos, Maldonado Dos J V; Valliyodan, B; Calyam, P P; Merchant, N; Nguyen, H T; Xu, D; Joshi, T

PGen: large-scale genomic variations analysis workflow and browser in SoyKB (Journal Article)

BMC Bioinformatics, 17 (Suppl 13), pp. 337, 2016, ISSN: 1471-2105 (Electronic) 1471-2105 (Linking).

(Links | BibTeX)

dos Santos, Maldonado J V; Valliyodan, B; Joshi, T; Khan, S M; Liu, Y; Wang, J; Vuong, T D; de Oliveira, M F; Marcelino-Guimaraes, F C; Xu, D; Nguyen, H T; Abdelnoor, R V

Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing (Journal Article)

BMC Genomics, 17 , pp. 110, 2016, ISSN: 1471-2164 (Electronic) 1471-2164 (Linking).

(Links | BibTeX)

Seeve, C M; Cho, I J; Hearne, L B; Srivastava, G P; Joshi, T; Smith, D O; Sharp, R E; Oliver, M J

Water-deficit-induced changes in transcription factor expression in maize seedlings (Journal Article)

Plant Cell Environ, 2016, ISSN: 1365-3040 (Electronic) 0140-7791 (Linking).

(Links | BibTeX)

39 entries « 1 of 4 »