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Core Faculty

Trupti Joshi, Ph.D.

Assistant Research Professor

Office: 271B Life Science Center

Phone: (573) 884-3528


Lab URL:

Home Department: Health Management Informatics

Concentration: Biomedical Informatics


Dr. Trupti Joshi is the Director of Translational Bioinformatics at the School of Medicine Medical Research Office and Assistant Research Professor in the Department of Molecular Microbiology and Immunology (MMI) at the University of Missouri-Columbia. She has appointments as Core Faculty with MU Informatics Institute (MUII), Interdisciplinary Plant Group (IPG) and Department of Computer Science. Her expertise is in the areas of bioinformatics and its application to plants sciences, animal sciences, biomedical sciences and health informatics fields. She obtained her Bachelor’s degree in Medicine and Surgery, followed by Advanced degree in Bioinformatics, both from highly reputable universities in India. Following this she obtained her MS degree in Bioinformatics from University of Tennessee and her Ph.D. degree in Bioinformatics from University of Missouri. She has published more than 50 journal publications including NAR, Nature, BMC Genomics, Bioinformatics, OMICS, PLOS One, etc. and Book Chapters in Knowledge Discovery in Bioinformatics: Techniques, Methods and Application and Genomics Protocols volume of Methods in Molecular Biology.

Selected Publications

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Hossain, M S; Kawakatsu, T; Kim, K D; Zhang, N; Nguyen, C T; Khan, S M; Batek, J M; Joshi, T; Schmutz, J; Grimwood, J; Schmitz, R J; Xu, D; Jackson, S A; Ecker, J R; Stacey, G

Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs (Journal Article)

New Phytol, 2017, ISSN: 1469-8137 (Electronic) 0028-646X (Linking).

(Links | BibTeX)

Joshi, T; Wang, J; Zhang, H; Chen, S; Zeng, S; Xu, B; Xu, D

The Evolution of Soybean Knowledge Base (SoyKB) (Journal Article)

Methods Mol Biol, 1533 , pp. 149-159, 2017, ISSN: 1940-6029 (Electronic) 1064-3745 (Linking).

(Links | BibTeX)


Joshi, T; Caswell, A; Acharya, S

A difficult case of recurrent hypoglycaemia: role of insulin assays in establishing the diagnosis (Journal Article)

Diabet Med, 33 (12), pp. e36-e39, 2016, ISSN: 1464-5491 (Electronic) 0742-3071 (Linking).

(Links | BibTeX)

Liu, Y; Khan, S M; Wang, J; Rynge, M; Zhang, Y; Zeng, S; Chen, S; Maldonado Dos Santos, J V; Valliyodan, B; Calyam, P P; Merchant, N; Nguyen, H T; Xu, D; Joshi, T

PGen: large-scale genomic variations analysis workflow and browser in SoyKB (Journal Article)

BMC Bioinformatics, 17 (Suppl 13), pp. 337, 2016, ISSN: 1471-2105 (Electronic) 1471-2105 (Linking).

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Maldonado dos Santos, J V; Valliyodan, B; Joshi, T; Khan, S M; Liu, Y; Wang, J; Vuong, T D; de Oliveira, M F; Marcelino-Guimaraes, F C; Xu, D; Nguyen, H T; Abdelnoor, R V

Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing (Journal Article)

BMC Genomics, 17 , pp. 110, 2016, ISSN: 1471-2164 (Electronic) 1471-2164 (Linking).

(Links | BibTeX)

Seeve, C M; Cho, I J; Hearne, L B; Srivastava, G P; Joshi, T; Smith, D O; Sharp, R E; Oliver, M J

Water-deficit-induced changes in transcription factor expression in maize seedlings (Journal Article)

Plant Cell Environ, 2016, ISSN: 1365-3040 (Electronic) 0140-7791 (Linking).

(Links | BibTeX)

Song, L; Prince, S; Valliyodan, B; Joshi, T; Maldonado dos Santos, J V; Wang, J; Lin, L; Wan, J; Wang, Y; Xu, D; Nguyen, H T

Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions (Journal Article)

BMC Genomics, 17 , pp. 57, 2016, ISSN: 1471-2164 (Electronic) 1471-2164 (Linking).

(Links | BibTeX)

Thanintorn, N; Wang, J; Ersoy, I; Al-Taie, Z; Jiang, Y; Wang, D; Verma, M; Joshi, T; Hammer, R; Xu, D; Shin, D

Rdf Sketch Maps - Knowledge Complexity Reduction for Precision Medicine Analytics (Journal Article)

Pac Symp Biocomput, 21 , pp. 417-28, 2016, ISSN: 2335-6936 (Print).

(Links | BibTeX)

Valdes-Lopez, O; Batek, J; Gomez-Hernandez, N; Nguyen, C T; Isidra-Arellano, M C; Zhang, N; Joshi, T; Xu, D; Hixson, K K; Weitz, K K; Aldrich, J T; Pasa-Tolic, L; Stacey, G

Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles (Journal Article)

Front Plant Sci, 7 , pp. 517, 2016, ISSN: 1664-462X (Linking).

(Links | BibTeX)

Valliyodan, B; Dan, Qiu ; Patil, G; Zeng, P; Huang, J; Dai, L; Chen, C; Li, Y; Joshi, T; Song, L; Vuong, T D; Musket, T A; Xu, D; Shannon, J G; Shifeng, C; Liu, X; Nguyen, H T

Landscape of genomic diversity and trait discovery in soybean (Journal Article)

Sci Rep, 6 , pp. 23598, 2016, ISSN: 2045-2322 (Electronic) 2045-2322 (Linking).

(Links | BibTeX)

32 entries « 1 of 4 »